phylosamp

The Probability of Transmission Given Phylogenetic Linkage

Implements novel tools that estimate the probability of true transmission between two cases given phylogenetic linkage and the expected number of true transmission links in a sample. Methods described in Wohl, Giles, and Lessler (2021) .

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install.packages("phylosamp")

0.1.6 by Justin Lessler, 13 days ago

https://github.com/HopkinsIDD/phylosamp

Report a bug at https://github.com/HopkinsIDD/phylosamp/issues

Browse source code at https://github.com/cran/phylosamp

Authors: John R Giles [aut, ctb] , Shirlee Wohl [aut, ctb] , Justin Lessler [aut, cre]

Documentation:   PDF Manual  

GPL-2 license

Imports reshape2, ggplot2, cowplot, RColorBrewer

Depends on stats

Suggests knitr, rmarkdown, testthat

See at CRAN

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