Reconstruct Perfect Phylogenies from DNA Sequence Data

Reconstructs perfect phylogeny at a user-given focal point and to depict and test association in a genomic region based on the reconstructed partitions. Charith B Karunarathna and Jinko Graham (2019) .


Reference manual

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0.2.1 by Charith Karunarathna, a year ago

Browse source code at

Authors: Charith Karunarathna and Jinko Graham

Documentation:   PDF Manual  

GNU General Public License license

Imports ape, phytools, Rcpp

Suggests HHG, dendextend, vcfR, R.rsp

Linking to Rcpp, RcppArmadillo

See at CRAN