Reconstruct Perfect Phylogenies from DNA Sequence Data

Reconstructs perfect phylogeny at a user-given focal point and to depict and test association in a genomic region based on the reconstructed partitions. Charith B Karunarathna and Jinko Graham (2019) .


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install.packages("perfectphyloR")

0.2.0 by Charith Karunarathna, 2 months ago


Browse source code at https://github.com/cran/perfectphyloR


Authors: Charith Karunarathna and Jinko Graham


Documentation:   PDF Manual  


GNU General Public License license


Imports ape, phytools, Rcpp

Suggests HHG, dendextend, vcfR, R.rsp

Linking to Rcpp, RcppArmadillo


See at CRAN