Nucleome Imaging Toolbox

Tools for 4D nucleome imaging. Quantitative analysis of the 3D nuclear landscape recorded with super-resolved fluorescence microscopy.


nucim (Nucleus Imaging Toolbox) is an R package for quantitative analyses of the 3D nuclear landscape recorded with super-resolved fluorescence microscopy.

The stable version is available on CRAN:

setRepositories(ind=c(1,2))
install.packages(c("nucim"))

The developement version is available on github. The developement version probably depends on the developement version of bioimagetools:

setRepositories(ind=c(1,2))
install.packages(c("devtools","spatstat","tiff","EBImage"))
devtools::install_github("bioimaginggroup/bioimagetools")
devtools::install_github("bioimaginggroup/nucim")

This package is developed at the BioImaging group at the Department of Statistics, LMU Munich.

News

NEWS

Version 1.0: Finalized for manuscript on Quantitative analyses of the 3D nuclear landscape recorded with super-resolved fluorescence microscopy (Schmid, Cremer, Cremer)

Reference manual

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install.packages("nucim")

1.0.0 by Volker Schmid, 3 months ago


https://bioimaginggroup.github.io/nucim


Browse source code at https://github.com/cran/nucim


Authors: Volker Schmid [aut, cre]


Documentation:   PDF Manual  


GPL-3 license


Imports fields, parallel, stringr

Depends on EBImage, bioimagetools

Suggests knitr, rmarkdown


See at CRAN