Tools for 3D imaging, mostly for biology/microscopy. Read and write TIFF stacks. Functions for segmentation, filtering and analyzing 3D point patterns.
bioimagetools is an R package for working with images in 3D and 4D, mostly for biology/microscopy.
The stable version is available on CRAN:
The developement version is available on github:
setRepositories(ind=c(1,2)) install.packages(c("devtools","tiff","EBImage")) devtools::install_github("volkerschmid/bioimagetools")
You may need to install additional libraries on your OS before you can install bioimagetools. E.g. on Ubuntu/Debian systems, please execute
sudo apt install libssl-dev libcurl4-openssl-dev libtiff5-dev libfftw3-dev
in the terminal before installing bioimagetools.
This package is developed at the BioImaging group at the Department of Statistics, in cooperation with the Biocenter, Department of Biology II, both at LMU Munich.
Version 1.1.1-3 Minor bug fixes
Version 1.1 Features: