Tools for 3D imaging, mostly for biology/microscopy. Read and write TIFF stacks. Functions for segmentation, filtering and analysing 3D point patterns.
bioimagetools is an R package for working with images in 3d and 4d.
setRepositories(ind=c(1,2)) install.packages(c("devtools","spatstat","tiff","EBImage")) devtools::install_github("volkerschmid/bioimagetools")
This package is developed at the BioImaging group at the Department of Statistics, LMU Munich.
Version 1.0: Finalized for manuscript on Quantitative analyses of the 3D nuclear landscape recorded with super-resolved fluorescence microscopy (Schmid, Cremer, Cremer)