Tools for Microscopy Imaging

Tools for 3D imaging, mostly for biology/microscopy. Read and write TIFF stacks. Functions for segmentation, filtering and analysing 3D point patterns.


bioimagetools is an R package for working with images in 3d and 4d.

setRepositories(ind=c(1,2))
install.packages(c("devtools","spatstat","tiff","EBImage"))
devtools::install_github("volkerschmid/bioimagetools")

This package is developed at the BioImaging group at the Department of Statistics, LMU Munich.

  • Volker Schmid [aut, cre],
  • Fabian Scheipl [ctb]

News

NEWS

Version 1.0: Finalized for manuscript on Quantitative analyses of the 3D nuclear landscape recorded with super-resolved fluorescence microscopy (Schmid, Cremer, Cremer)

Reference manual

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install.packages("bioimagetools")

1.1.0 by Volker Schmid, 10 months ago


https://bioimaginggroup.github.io/bioimagetools


Browse source code at https://github.com/cran/bioimagetools


Authors: Volker Schmid [aut, cre], Priyanka Kukreja [ctb], Fabian Scheipl [ctb]


Documentation:   PDF Manual  


GPL-3 license


Imports parallel, tiff, stats, grDevices, utils, EBImage, httr

Suggests knitr, rmarkdown


Depended on by nucim.


See at CRAN