Methods for Taxonomic Classification of Prokaryotes

Functions for assigning 16S sequence data to a taxonomic level in the tree-of-life for prokaryotes.


Reference manual

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1.1 by Lars Snipen, a year ago

Browse source code at

Authors: Kristian Hovde Liland, Hilde Vinje, Lars Snipen

Documentation:   PDF Manual  

GPL (>= 2) license

Imports Rcpp, RcppParallel

Depends on microseq, microcontax

Suggests knitr, rmarkdown

Linking to Rcpp, RcppEigen, RcppParallel

System requirements: GNU make

See at CRAN