Gene Set Enrichment Analysis via Integration of Metabolic Networks and RNA-Seq Data

Integrates metabolic networks and RNA-seq data to construct condition-specific series of metabolic sub-networks and applies to gene set enrichment analysis (Tran et al. (2018) ).


Reference manual

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1.2.1 by Van Du T. Tran, 6 months ago

Browse source code at

Authors: Van Du T. Tran [aut, cre] , Marco Pagni [aut]

Documentation:   PDF Manual  

GPL-3 license

Imports utils, stats, methods, parallel, grDevices, graphics, Matrix, sys

Depends on sybil, AnnotationDbi, ape, topGO

Suggests glpkAPI, clpAPI, KernSmooth, KEGGREST, survival, ctc, knitr, rmarkdown

See at CRAN