Gene Set Enrichment Analysis via Integration of Metabolic Networks and RNA-Seq Data

Integrates metabolic networks and RNA-seq data to construct condition-specific series of metabolic sub-networks and applies to gene set enrichment analysis (Tran et al. (2018) ).


Reference manual

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1.2.3 by Van Du T. Tran, 2 months ago

Browse source code at

Authors: Van Du T. Tran [aut, cre] , Marco Pagni [aut]

Documentation:   PDF Manual  

GPL-3 license

Imports utils, stats, methods, parallel, grDevices, graphics, Matrix, AnnotationDbi, GO.db

Depends on sybil, ape

Suggests glpkAPI, clpAPI, topGO, unix, KernSmooth, KEGGREST, survival, ctc, knitr, rmarkdown

See at CRAN