The Breakdown of Genomic Ancestry Blocks in Hybrid Lineages

Individual based simulations of hybridizing populations, where the accumulation of junctions is tracked. Furthermore, mathematical equations are provided to verify simulation outcomes. Both simulations and mathematical equations are based on Janzen (2018, ) and Janzen (2020, ).


Individual based simulations of hybridizing populations, where the accumulation of junctions is tracked. Furthermore, mathematical equations are provided to verify simulation outcomes. Both simulations and mathematical equations are based on Janzen et al. (2018)

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references

Janzen, T. , Nolte, A. W. and Traulsen, A. (2018), The breakdown of genomic ancestry blocks in hybrid lineages given a finite number of recombination sites. Evolution, 72: 735-750. https://doi.org/10.1111/evo.13436

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Reference manual

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install.packages("junctions")

2.0.1 by Thijs Janzen, 5 months ago


https//github.com/thijsjanzen/junctions


Report a bug at https://github.com/thijsjanzen/junctions/issues


Browse source code at https://github.com/cran/junctions


Authors: Thijs Janzen [aut, cre]


Documentation:   PDF Manual  


GPL (>= 2) license


Imports nloptr, Rcpp, tibble

Depends on RcppParallel

Suggests dplyr, ggplot2, knitr, magrittr, rmarkdown, testthat, tidyr

Linking to nloptr, Rcpp, RcppParallel

System requirements: C++14


Suggested by GenomeAdmixR.


See at CRAN