Compute, Handle and Plot Incidence of Dated Events

Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence2' is used to store computed incidence and can be easily manipulated, subsetted, and plotted. This package is part of the RECON (< https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.


News

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("incidence2")

0.1.0 by Tim Taylor, 12 days ago


https://github.com/reconhub/incidence2


Report a bug at https://github.com/reconhub/incidence2/issues


Browse source code at https://github.com/cran/incidence2


Authors: Tim Taylor [aut, cre] , Thibaut Jombart [aut] , Zhian N. Kamvar [aut] , Rich FitzJohn [aut] , Jun Cai [ctb] , Sangeeta Bhatia [ctb] , Jakob Schumacher [ctb] , Juliet R.C. Pulliam [ctb]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports ggplot2, aweek, rlang, dplyr, tibble, ellipsis, vctrs, magrittr, pillar

Suggests outbreaks, testthat, knitr, rmarkdown, covr


See at CRAN