Inferring the Topology of Omics Data

Infers a topology of relationships between different datasets, such as multi-omics and phenotypic data recorded on the same samples. We based this methodology on the RV coefficient (Robert & Escoufier, 1976, ), a measure of matrix correlation, which we have extended for partial matrix correlations and binary data (Aben et al., 2018, ).


Reference manual

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install.packages("iTOP")

1.0.2 by Nanne Aben, 8 years ago


Browse source code at https://github.com/cran/iTOP


Authors: Nanne Aben


Documentation:   PDF Manual  


GPL-2 license


Imports Matrix, corpcor

Suggests knitr, rmarkdown, NMF, pcalg, Rgraphviz


See at CRAN