An integrative factor analysis model for drug-pathway association inference

This package implements a Bayesian sparse factor model for the joint analysis of paired datasets, one is the gene expression dataset and the other is the drug sensitivity profiles, measured across the same panel of samples, e.g., cell lines. Prior knowledge about gene-pathway associations can be easily incorporated in the model to aid the inference of drug-pathway associations.


Reference manual

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3.0 by Haisu Ma, 5 years ago

Browse source code at

Authors: Haisu Ma <[email protected]>

Documentation:   PDF Manual  

GPL (>= 2) license

Depends on Rlab, MASS, coda, ROCR

See at CRAN