Extended State-Space SIR Models

An implementation of extended state-space SIR models developed by Song Lab at UM school of Public Health. There are several functions available by 1) including a time-varying transmission modifier, 2) adding a time-dependent quarantine compartment, 3) adding a time-dependent antibody-immunization compartment. Wang L et al. (2020) .


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Reference manual

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install.packages("eSIR")

0.4.1 by Michael Kleinsasser, 24 days ago


Browse source code at https://github.com/cran/eSIR


Authors: Lili Wang [aut] , Song Lab [aut] (<http://websites.umich.edu/~songlab/>) , Paul Egeler [ctb] (Spectrum Health Office of Research and Education) , Michael Kleinsasser [cre]


Documentation:   PDF Manual  


CC BY 4.0 license


Imports coda, chron, data.table, ggplot2, grDevices, graphics, gtools, scales, stats, reshape2, rjags, utils

Suggests testthat


See at CRAN