Piecewise Linear Segmentation by Dynamic Programming

Piecewise linear segmentation of ordered data by a dynamic programming algorithm. The algorithm was developed for time series data, e.g. growth curves, and for genome-wide read-count data from next generation sequencing, but is broadly applicable. Generic implementations of dynamic programming routines allow to scan for optimal segmentation parameters and test custom segmentation criteria ("scoring functions").


Reference manual

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0.1.1 by Rainer Machne, a year ago


Report a bug at https://gitlab.com/raim/dpseg/-/issues

Browse source code at https://github.com/cran/dpseg

Authors: Rainer Machne [aut, cre] , Peter F. Stadler [aut]

Documentation:   PDF Manual  

GPL (>= 2) license

Imports Rcpp

Suggests markdown, knitr, htmltools, RcppDynProg, microbenchmark, ggplot2

Linking to Rcpp

See at CRAN