Verifiable FDR Diagnostics for Proteomics

Provides methods to compute verifiable false discovery rate (FDR) diagnostic checks for workflows based on target-decoy competition and related confidence measures. Implements calibration, stability and tail diagnostics, including tail support, threshold elasticity, posterior error probability (PEP) reliability, and equal-chance checks. If you used this package in your research, please cite the associated preprint . Detailed examples of using this package can also be found on the GitHub repository (< https://github.com/Jacky11/diagFDR>).


Reference manual

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install.packages("diagFDR")

0.1.1 by Quentin Giai Gianetto, 6 months ago


https://www.biorxiv.org/content/10.64898/2026.04.16.718468


Browse source code at https://github.com/cran/diagFDR


Authors: Quentin Giai Gianetto [aut, cre]


Documentation:   PDF Manual  


GPL-3 license


Imports dplyr, tibble, ggplot2, purrr, rlang, readr, xml2, cp4p, tidyr, scales, data.table

Suggests arrow, knitr, officer, rvg, testthat, withr, rmarkdown, jsonlite


See at CRAN