Tools for Retrieval and Storage of Functional Genomics Data

Package for the systematic retrieval and storage of functional genomics data via a MySQL database.


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Reference manual

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install.packages("compendiumdb")

1.0.3 by Umesh Nandal, 4 years ago


http://wiki.bioinformaticslaboratory.nl/foswiki/bin/view/BioLab/CompendiumDB


Browse source code at https://github.com/cran/compendiumdb


Authors: Umesh K. Nandal <[email protected]> and Perry D. Moerland <[email protected]>


Documentation:   PDF Manual  


GPL (>= 2) license


Imports methods

Depends on Biobase, GEOquery, RMySQL

Suggests inSilicoDb, genefilter, GEOmetadb, gplots, GSVA, limma, mogene10sttranscriptcluster.db, RColorBrewer

System requirements: Perl (>=5), MySQL (>=5.6)


See at CRAN