Batch Effect Adjustments

Different adjustment methods for batch effects in biomarker data, such as from tissue microarrays. Some methods attempt to retain differences between batches that may be due to between-batch differences in "biological" factors that influence biomarker values.


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Reference manual

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install.packages("batchtma")

0.1.6 by Konrad Stopsack, a month ago


https://stopsack.github.io/batchtma/, https://github.com/stopsack/batchtma


Browse source code at https://github.com/cran/batchtma


Authors: Konrad Stopsack [aut, cre] , Travis Gerke [aut]


Documentation:   PDF Manual  


GPL-3 license


Imports broom, dplyr, geepack, ggplot2, limma, nnet, purrr, quantreg, rlang, stringr, tibble, tidyr, magrittr

Suggests knitr, rmarkdown, tidyverse


See at CRAN