Analyses of Phylogenetic Treeshape

Simulation and analysis of phylogenetic tree topologies using statistical indices. It is a companion library of the 'ape' package. It provides additional functions for reading, plotting, manipulating phylogenetic trees. It also offers convenient web-access to public databases, and enables testing null models of macroevolution using corrected test statistics. Trees of class "phylo" (from 'ape' package) can be converted easily. Implements methods described in Bortolussi et al. (2005) and Maliet et al. (2017) .


apTreeshape

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Reference manual

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install.packages("apTreeshape")

1.5-0.1 by Michael Blum, 18 days ago


Browse source code at https://github.com/cran/apTreeshape


Authors: Nicolas Bortolussi , Michael Blum , Eric Durand , Olivier Francois , Odile Maliet


Documentation:   PDF Manual  


Task views: Phylogenetics, Especially Comparative Methods


GPL (>= 2) license


Imports quantreg, cubature, coda, pbapply

Depends on ape


Imported by secsse, treeducken.

Depended on by iteRates.


See at CRAN