Analyses of Phylogenetic Treeshape

Simulation and analysis of phylogenetic tree topologies using statistical indices. It is a companion library of the 'ape' package. It provides additional functions for reading, plotting, manipulating phylogenetic trees. It also offers convenient web-access to public databases, and enables testing null models of macroevolution using corrected test statistics. Trees of class "phylo" (from 'ape' package) can be converted easily. Implements methods described in Bortolussi et al. (2005) and Maliet et al. (2017) .



Reference manual

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1.5-0.1 by Michael Blum, 7 months ago

Browse source code at

Authors: Nicolas Bortolussi , Michael Blum , Eric Durand , Olivier Francois , Odile Maliet

Documentation:   PDF Manual  

Task views: Phylogenetics, Especially Comparative Methods

GPL (>= 2) license

Imports quantreg, cubature, coda, pbapply

Depends on ape

Imported by secsse, treeducken.

Depended on by iteRates.

See at CRAN