AIRR Data Representation Reference Library

Schema definitions and read, write and validation tools for data formatted in accordance with the AIRR Data Representation schemas defined by the AIRR Community < http://docs.airr-community.org>.


AIRR Data Representation Reference Library

airr is an R package for working with data formatted according to the AIRR Data Representation schemas. It includes the full set of schema definitions along with simple functions for read, write and validation.

News

Version 1.2.0: August 17, 2018

  • Updated schema set to v1.2.
  • Changed defaults to base="1" for read and write functions.
  • Updated example TSV file with coordinate changes, addition of germline_alignment data and simplification of sequence_id values.

Version 1.1.0: May 1, 2018

Initial release.

Reference manual

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install.packages("airr")

1.2.0 by Jason Vander Heiden, 6 months ago


http://docs.airr-community.org


Report a bug at https://github.com/airr-community/airr-standards/issues


Browse source code at https://github.com/cran/airr


Authors: Jason Vander Heiden [aut, cre] , Susanna Marquez [aut] , AIRR Community [cph]


Documentation:   PDF Manual  


CC BY 4.0 license


Imports methods, readr, stats, stringi, yaml

Suggests knitr, rmarkdown, testthat


See at CRAN