Data Structure and Manipulations Tool for Host and Viral Population

Statistical Methods for Inferring Transmissions of Infectious Diseases from deep sequencing data (SMITID). It allow sequence-space-time host and viral population data storage, indexation and querying.


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Reference manual

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install.packages("SMITIDstruct")

0.0.4 by Jean-Francois Rey, a month ago


https://informatique-mia.inra.fr/biosp/anr-smitid-project, https://gitlab.paca.inra.fr/SMITID/structR


Report a bug at https://gitlab.paca.inra.fr/SMITID/structR/issues


Browse source code at https://github.com/cran/SMITIDstruct


Authors: Jean-Francois Rey [aut, cre]


Documentation:   PDF Manual  


GPL (>= 2) | file LICENSE license


Imports ggplot2, sf, stats, Biostrings

Depends on methods, utils, grDevices, graphics

Suggests testthat


Suggested by SMITIDvisu.


See at CRAN