Data Structure and Manipulations Tool for Host and Viral Population

Statistical Methods for Inferring Transmissions of Infectious Diseases from deep sequencing data (SMITID). It allow sequence-space-time host and viral population data storage, indexation and querying.


Reference manual

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0.0.5 by Jean-Francois Rey, a year ago,

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Authors: Jean-Francois Rey [aut, cre]

Documentation:   PDF Manual  

GPL (>= 2) | file LICENSE license

Imports ggplot2, sf, stats, Biostrings

Depends on methods, utils, grDevices, graphics

Suggests testthat

Suggested by SMITIDvisu.

See at CRAN