Analyze molecular dynamics (MD) simulation data using structural
alphabets. Protein local conformations from molecular simulations are
encoded in a compressed string representation. Residue-level UniProt
annotations can be directly retrieved. Comparative analysis tools are
available to investigate conformational variability, coordinated motions,
and differences between systems (e.g. wild-type vs mutant; bound vs unbound).
Methodological details for the structural alphabet analysis can be found in
Pandini et al. (2013)