Plot Linkage Group Maps with Quantitative Trait Loci

Produces high resolution, publication ready linkage maps and quantitative trait loci maps. Input can be output from 'R/qtl', simple text or comma delimited files. Output is currently a portable document file.


Plot Linkage Group Maps with QTLs

Install LinkageMapView by downloading the latest CRAN release:

install.packages("LinkageMapView")
library("LinkageMapView")

If you wish to install the latest developmental release

First install the devtools package.

install.packages("devtools")
library(devtools)

Then to install LinkageMapView:

devtools:: install_github("louellette/LinkageMapView",build_vignettes=TRUE)

Once installed:

library(LinkageMapView)

To see examples and parameter descriptions:

?lmv.linkage.plot

Feel free to add Issues for problems or questions.

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Reference manual

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install.packages("LinkageMapView")

2.1.2 by Lisa Ouellette, 7 months ago


https://github.com/louellette/LinkageMapView


Report a bug at https://github.com/louellette/LinkageMapView/issues


Browse source code at https://github.com/cran/LinkageMapView


Authors: Lisa Ouellette [aut, cre]


Documentation:   PDF Manual  


GPL-3 license


Imports qtl, plotrix, grDevices, graphics, utils, RColorBrewer

Suggests rmarkdown, testthat, knitr


See at CRAN