Global Optimization by Differential Evolution

Implements the differential evolution algorithm for global optimization of a real-valued function of a real-valued parameter vector.


News

Changes in version 2.2-4 o Vignette source code included in package. o New option 'cluster' allows passing existing parallel cluster, using code by Alexey Stukalov. o As pointed out by Jason Thorpe: "paralell:::.onLoad() makes a call to stats::runif(1L) depending on whether or not Sys.getenv("R_PARALLEL_PORT") returns an integer, which appears to be platform dependent. The result of this bug is that the return value of DEoptim() will differ by platform the first time it is called, even when taking care to call set.seed() prior to calling DEoptim()." We now require 'parallel' (to ensure it is loaded) to avoid this behaviour. Changes in version 2.2-3 o DESCRIPTION updated. o Change to steptol interpretation in C, thanks to Alec Solway. o Change to foreach logic, thanks to Jonathan Owen. o Change to NP setting when initialpop provided, thanks to Tobias KD Weber. o More flexible passing of args to foreach. o Makefile changed to remove references to shell Changes in version 2.2-2 o Change to de4_0.c to replace memcpy with memmove

Changes in version 2.2-1 o Invisible-to-users changes to evaluate.c to fix misuse of isnan

Changes in version 2.2-0 o Thanks to Joshua Ulrich and Kris Boudt, parallel operation is possible, using foreach. o sandbox directory added, with example parallel code o Kris Boudt added as a contributor o foreach added as suggested package o foreachArgs arguement added to DEoptim.control() function o Fixed typo in box constraint example in DEoptim.Rd o VignetteDepends metadata added to .Rnw o Added mapping function for integer / cardinality constraints o checkWinner and avWinner options have been removed. If the user desires averaging (to deal with a stochastic objective function) then a wrapper function may be used to give the average value over several calls.

Changes in version 2.1-2 o Modified CITATION file and Rd files. o Joshua Ulrich fixed the crash caused by a stack overflow when optimizing many parameters. Thanks to Suraj Gupta for pointing out the problem.

Changes in version 2.1-1 o Added portfolio optimization vignette. o Bug with reltol / steptol stopping criteria fixed. o Changed JADE to be 'on' when c > 0 for any strategy and set c=0 as default in DEoptim.control (JADE is 'off').

Changes in version 2.1-0 o Added documentation of strategy six. o Fixed typos in vignette. o Modified CITATION file and Rd files.

Changes in version 2.0-9 o Added vignette.

Changes in version 2.0-8 o Many improvements in the C code, thanks to Dirk Eddelbuettel's detailed code review. Dirk's contributions include: - fixed gd_bestmemit and gd_bestval initialization to avoid segfaults - propegate nfeval back to DEoptimC function - allocate parameter vector once, rather than once per evaluate call - allocate ia_urn1 once, rather than once per permute call - replace strategy if/else block with switch statement o More bug fixes and optimizations when bs=TRUE o Fixed bug in initial population check. Thanks to Vinecius Veloso. o Added '...' to objective function call in evaluate rather than in DEoptim R function. This yields a speed gain, since it avoids an extra function call. Thanks to Dirk Eddelbuettel for the idea.

Changes in version 2.0-7 o Many improvements in the C code, including removal of all global variables thanks to Joshua Ulrich. o Thanks to Ralf Tautenhahn and Joshua Ulrich, a bug with bs=TRUE is removed. o Thanks to Dirk Eddelbuettel several bugs (some possibly causing segfaults) removed. o Added DE/current-to-p-best/1 strategy. o Added ability to only print every "trace" iterations.

Changes in version 2.0-6 o Added dataset documentation now required by R CMD check.

Changes in version 2.0-5 o CITATION file modified, updated references. o Removed check on length of parameter vector (it was left over from versions prior to 2.0-3, thanks to Jean-Luc Jannink.

Changes in version 2.0-4 o added check to prevent the C code being called with NP<4, thanks to Joshua Ulrich.
o fixed bug introduced in version 2.0-3 that made the objective function values associated with the winning population members incorrect o added new options checkWinner and avWinner to the 'control' arguement.

Changes in version 2.0-3 o Re-write of much of the underlying C code. Now dynamically allocate storage, so can optimize on parameter vectors of arbitrary size, in a population of arbitrary size. Changed the documentation to reflect the new lack of limitations.
o Stop with an error right away if a NaN objective function value occurs. o Default value of CR changed to .9 from .5.
o Added reference and minor changes to documentation.

Changes in version 2.0-2 o The maximum number of parameters that can be optimized (set statically in de.h with #define MAXDIM) was changed from 20 to 200. o zzz.R file removed and replaced with call to `useDynLib(DEoptim)' in NAMESPACE o Brian Peterson pointed out problems occurring when the objective function returns a NaN value. Error messages are now added to report when this happens. o permute patched, see below. Thanks to Hans Werner Borchers for pointing out that the problem was not fixed in the CRAN version.

Changes in version 2.0-1 o Soren Macbeth and Joshua Ulrich pointed out and patched bugs in the function 'permute'. Note that the version 2.0-1 on CRAN does not patch these bugs correctly. The correction is made in the next version.

Changes in version 2.0-0 o The R-based implementation of Differential Evolution has been replaced with a C-based implementation similar to the MS Visual C++ v5.0 implementation accompanying the book `Differential Evolution - A Practical Approach to Global Optimization',downloaded from http://www.icsi.berkeley.edu/~storn/DeWin.zip.

The new C implementation is significantly faster. 

o The S3 method for plotting has been enhanced. It allows now to plot the intermediate populations if provided.

o The package maintainer has been changed to Katharine Mullen, [email protected].

o A NAMESPACE has been added.

o Argument FUN for DEoptim is now called fn for compatibility with optim.

o demo file has been removed

o CITATION file modified

Changes in version 1.3-3

o CITATION file modified.

Changes in Version 1.3-2

o CITATION file modified.

Changes in Version 1.3-1

o new plotting argument 'storepop' which displays intermediate population locations.

Changes in Version 1.3-0

o the function 'DEoptim' has two arguments: 'storepopfrom' and 'storepopfreq', for tracking intermediate populations; the output contains also the list 'storepop' which belongs to the 'member' list's element.

o small bug fixed for the number of iterations.

Changes in Version 1.2-1

o fix a bug in the optimization procedure. Thanks to Tarmo Leinonen for pointing out this bug.

o add a demo to show how to increase the number of printed digits while performing the optimization.

Changes in Version 1.2-0

o the function 'DEoptim' has the new argument 'initial', which is an initial or starting population. You can therefore introduce a starting population in the optimization procedure. This can be useful when the optimization has to be run many times on data sets which differ sligthly. Thanks to Tarmo Leinonen for this nice suggestion.

o the function 'DEoptim' outputs now 'pop' in the 'member' list's element. This is the population obtained at the last iteration which can be used as a starting population in 'DEoptim' via the argument 'initial'.

o the function stops if any 'NA' or 'NaN' value is returned by the function 'FUN' to be optimized.

o the function DEoptim does not handle exponential crossover anymore. This is so to simplify and accelerate the optimization procedure. Thanks to Vladimir Eremeev for pointing out a bug with the exponential crossover.

o the function 'DEoptim' outputs a list of lists. This is more natural and in the same spirit of usual optimization functions. Thanks to Vladimir Eremeev for proposing this change.

o documentation for the 'digits'. Thanks to Eugene Demidenko for pointing out this.

Reference manual

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install.packages("DEoptim")

2.2-4 by Katharine Mullen, 3 years ago


Browse source code at https://github.com/cran/DEoptim


Authors: David Ardia [aut] , Katharine Mullen [aut, cre] , Brian Peterson [aut] , Joshua Ulrich [aut] , Kris Boudt [ctb]


Documentation:   PDF Manual  


Task views: Optimization and Mathematical Programming


GPL (>= 2) license


Depends on parallel

Suggests foreach, iterators, colorspace, lattice


Imported by BBEST, BMhyb, BaMORC, CEGO, DstarM, FuzzyStatProb, IDE, KSPM, Luminescence, QuantumClone, ROI.plugin.deoptim, SPOT, SpaDES.core, carfima, phenex, prodest, rrscale, svars, trawl.

Depended on by EcoHydRology, EstimationTools, galts, likeLTD, micEconCES, quickpsy, selectMeta, spsh.

Suggested by BENMMI, BayesianTools, MSCMT, PortfolioAnalytics, RcppDE, SACOBRA, SpaDES.tools, airGR, ctsem, nanop, npsp, openEBGM, swmmr.


See at CRAN