Compositional Models to Longitudinal Microbiome Data

Implementation of models to analyse compositional microbiome time series taking into account the interaction between groups of bacteria. The models implemented are described in Creus-Martí et al (2018, ISBN:978-84-09-07541-6), Creus-Martí et al (2021) and Creus-Martí et al (2022) .


Reference manual

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install.packages("CoDaLoMic")

0.1.1 by Irene Creus Martí, a year ago


Browse source code at https://github.com/cran/CoDaLoMic


Authors: Irene Creus Martí [aut, cre] (ORCID:


Documentation:   PDF Manual  


GPL-3 license


Imports xtable, ggplot2, reshape2, compositions, MASS, broom, R2jags, ggbiplot, zCompositions, utils

Suggests testthat, gtools, knitr, parallel, base


See at CRAN