Bayesian analysis of luminescence data and C-14 age estimates. Bayesian models are based on the following publications: Combes, B. & Philippe, A. (2017)
plot_Ages()
this function replaces code used internally by the functions AgeC14_Compution()
and AgeS_Computation()
to create an age overview plot. Before the user had no control over the appearance of age plot output. This is still the
case if the functions AgeC14_Compution()
, AgeS_Computation()
and Age_OSLC14()
are used (although internally only the function plot_Ages()
is called),
however, both functions now return a new list of class BayLum.list
which is recognised by the function plot_Ages()
and can be used to plot the typical age plot while providing several arguments for adjusting the plot output.ScatterSamples()
is replaced by the function plot_Scatterplots()
AgeC14_Compution()
and AgeS_Computation()
gain a new class BayLum.list
AgeC14_Compution()
and AgeS_Computation()
has been removedNb_chaines
was replaced by n.chains
wherever it occured in the package (functions and documentation)plot_Scatterplots()
gained a new argument plot_type
, allowing to switch between the default hexbin plot and
a function developed for 'BayLum(
plot_type = "smoothScatter"`)plot_Scatterplots()
gained a new argument plot_mode
to allow single xy plotsplot_Scatterplots()
now accepts a two column data.frame
as inputbuildKernSmooth
used in plot_Scatterplots()
MCMC_plot()
was replaced by the newly written function plot_MCMC()
Concat_DataFile()
is deprecated and is basically replaced by the function combine_DataFiles()
AgeC14_Compution()
and Age_OSL14()
now returns age results with two digitsAgeS_Computation()
now returns the MCMC information from all samples of the PDF output is set to TRUE
Age_OSLC14()
never returned numerical data; fixedAge_OSLC14()
age format, now in ka for C-14 instead of yearsAgeS_Computation()
could not be run; fixedGenerate_DataFile()
and Generate_DataFile_MG()
do no longer expecting the name sheme bin.BINGenerate_DataFile()
and Generate_DataFile_MG()
now supports the ...
argument to pass further
arguments to the function Luminescene::read_BIN2R()
Generate_DataFile()
and Generate_DataFile_MG()
gained a new argument verbose
to control the terminal outputAge_Computation()
,AgeS_Computation()
,AgeC14_Computation()
, Age_OSLC14()
now support the argument
quiet
and pipe it to rjags
to suppress the terminal outputAgeC14_Computation()
now returns a warning if outliers are detected.LT_RegenDose()
gained two new arguments nrow
and ncol
became a little bit more user friendly