Analysis of Congruent Diversification Classes

Features tools for exploring congruent phylogenetic birth-death models. It can construct the pulled speciation- and net-diversification rates from a reference model. Given alternative speciation- or extinction rates, it can construct new models that are congruent with the reference model. Functionality is included to sample new rate functions, and to visualize the distribution of one congruence class. See also Louca & Pennell (2020) .


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install.packages("ACDC")

1.0.0 by Bjørn Tore Kopperud, 7 days ago


https://github.com/afmagee/ACDC


Browse source code at https://github.com/cran/ACDC


Authors: Bjørn Tore Kopperud [aut, cre] , Sebastian Höhna [aut] , Andrew F. Magee [aut]


Documentation:   PDF Manual  


GPL-3 license


Imports magrittr, deSolve, dplyr, tibble, colorspace, patchwork, latex2exp, tidyr

Depends on ggplot2

Suggests knitr, rmarkdown, ape


See at CRAN