Analysis of Congruent Diversification Classes

Features tools for exploring congruent phylogenetic birth-death models. It can construct the pulled speciation- and net-diversification rates from a reference model. Given alternative speciation- or extinction rates, it can construct new models that are congruent with the reference model. Functionality is included to sample new rate functions, and to visualize the distribution of one congruence class. See also Louca & Pennell (2020) .


Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.


1.0.0 by Bjørn Tore Kopperud, 7 days ago

Browse source code at

Authors: Bjørn Tore Kopperud [aut, cre] , Sebastian Höhna [aut] , Andrew F. Magee [aut]

Documentation:   PDF Manual  

GPL-3 license

Imports magrittr, deSolve, dplyr, tibble, colorspace, patchwork, latex2exp, tidyr

Depends on ggplot2

Suggests knitr, rmarkdown, ape

See at CRAN