The Iterative Signature Algorithm

The ISA is a biclustering algorithm that finds modules in an input matrix. A module or bicluster is a block of the reordered input matrix.

Create Rich Command Line Applications

Create rich command line applications, with colors, headings, lists, alerts, progress bars, etc. It uses CSS for custom themes. This package is now superseded by the 'cli' package. Please use 'cli' instead in new projects.

Package Dependency Resolution and Downloads

Find recursive dependencies of 'R' packages from various sources. Solve the dependencies to obtain a consistent set of packages to install. Download packages, and install them. It supports packages on 'CRAN', 'Bioconductor' and other 'CRAN-like' repositories, 'GitHub', package 'URLs', and local package trees and files. It caches metadata and package files via the 'pkgcache' package, and performs all 'HTTP' requests, downloads, builds and installations in parallel. 'pkgdepends' is the workhorse of the 'pak' package.

Raw System Credential Store Access from R

Aims to support all features of the system credential store, including non-portable ones. Supports 'Keychain' on 'macOS', and 'Credential Manager' on 'Windows'. See the 'keyring' package if you need a portable 'API'.

Cache 'CRAN'-Like Metadata and R Packages

Metadata and package cache for CRAN-like repositories. This is a utility package to be used by package management tools that want to take advantage of caching.

R SDK and Exporters for OpenTelemetry

OpenTelemetry is a collection of tools, APIs, and SDKs used to instrument, generate, collect, and export telemetry data (metrics, logs, and traces) for analysis in order to understand your software's performance and behavior. This package contains the OpenTelemetry SDK, and exporters. Use this package to export traces, metrics, logs from instrumented R code. Use the otel package to instrument your R code for OpenTelemetry.

C Resource Cleanup via Exit Handlers

Wrapper of .Call() that runs exit handlers to clean up C resources. Helps managing C (non-R) resources while using the R API.

Multi-Format Archive and Compression Support

Bindings to 'libarchive' < http://www.libarchive.org> the Multi-format archive and compression library. Offers R connections and direct extraction for many archive formats including 'tar', 'ZIP', '7-zip', 'RAR', 'CAB' and compression formats including 'gzip', 'bzip2', 'compress', 'lzma' and 'xz'.

List, Query, Manipulate System Processes

List, query and manipulate all system processes, on 'Windows', 'Linux' and 'macOS'.

Execute and Control System Processes

Tools to run system processes in the background. It can check if a background process is running; wait on a background process to finish; get the exit status of finished processes; kill background processes. It can read the standard output and error of the processes, using non-blocking connections. 'processx' can poll a process for standard output or error, with a timeout. It can also poll several processes at once.