Visualize the Effect of a Continuous Variable on a Time-to-Event Outcome

Graphically display the (causal) effect of a continuous variable on a time-to-event outcome using multiple different types of plots based on g-computation. Those functions include, among others, survival area plots, survival contour plots, survival quantile plots and 3D surface plots. Due to the use of g-computation, all plot allow confounder-adjustment naturally. For details, see Robin Denz, Nina Timmesfeld (2023) .

Weierstrass and Jacobi Elliptic Functions

A suite of elliptic and related functions including Weierstrass and Jacobi forms. Also includes various tools for manipulating and visualizing complex functions.

The Symmetric Group: Permutations of a Finite Set

Manipulates invertible functions from a finite set to itself. Can transform from word form to cycle form and back. To cite the package in publications please use Hankin (2020) "Introducing the permutations R package", SoftwareX, volume 11 .

Calculate Slopes of Roads, Rivers and Trajectories

Calculates the slope (longitudinal gradient or steepness) of linear geographic features such as roads (for more details, see Ariza-López et al. (2019) ) and rivers (for more details, see Cohen et al. (2018) ). It can use local Digital Elevation Model (DEM) data or download DEM data via the 'ceramic' package. The package also provides functions to add elevation data to linestrings and visualize elevation profiles.

Alluvial Diagrams

Creating alluvial diagrams (also known as parallel sets plots) for multivariate and time series-like data.

Easy Spatial Microsimulation (Raking) in R

Functions for performing spatial microsimulation ('raking') in R.

Meta-Package for Thematic Mapping with 'tmap'

Attaches a set of packages commonly used for spatial plotting with 'tmap'. It includes 'tmap' and its extensions ('tmap.glyphs', 'tmap.networks', 'tmap.cartogram', 'tmap.mapgl'), as well as supporting spatial data packages ('sf', 'stars', 'terra') and 'cols4all' for exploring color palettes. The collection is designed for thematic mapping workflows and does not include the full set of packages from the R-spatial ecosystem.

Bayesian Calibration of Complex Computer Codes

Performs Bayesian calibration of computer models as per Kennedy and O'Hagan 2001. The package includes routines to find the hyperparameters and parameters; see the help page for stage1() for a worked example using the toy dataset. A tutorial is provided in the calex.Rnw vignette; and a suite of especially simple one dimensional examples appears in inst/doc/one.dim/.

Sparse Arrays and Multivariate Polynomials

Sparse arrays interpreted as multivariate polynomials. Uses 'disordR' discipline (Hankin, 2022, ). To cite the package in publications please use Hankin (2022) .

Optimal Exact Tests for Multiple Binary Endpoints

Calculates exact hypothesis tests to compare a treatment and a reference group with respect to multiple binary endpoints. The tested null hypothesis is an identical multidimensional distribution of successes and failures in both groups. The alternative hypothesis is a larger success proportion in the treatment group in at least one endpoint. The tests are based on the multivariate permutation distribution of subjects between the two groups. For this permutation distribution, rejection regions are calculated that satisfy one of different possible optimization criteria. In particular, regions with maximal exhaustion of the nominal significance level, maximal power under a specified alternative or maximal number of elements can be found. Optimization is achieved by a branch-and-bound algorithm. By application of the closed testing principle, the global hypothesis tests are extended to multiple testing procedures.