Companion to the 'xeus-r' 'jupyter' Kernel

Set of R functions to be coupled with the 'xeus-r' 'jupyter' kernel in order to drive execution of code in notebook input cells, how R objects are to be displayed in output cells, and handle two way communication with the front end through comms.

Hyperlink Automatic Detection

Automatic detection of hyperlinks for packages and calls in the text of 'rmarkdown' or 'quarto' documents.

Simplified Error Handling

Alternative to using withCallingHandlers() in the simple case of catch and rethrow. The `%!%` operator evaluates the expression on its left hand side, and if an error occurs, the right hand side is used to construct a new error that embeds the original error.

Interface to the 'Open Tree of Life' API

An interface to the 'Open Tree of Life' API to retrieve phylogenetic trees, information about studies used to assemble the synthetic tree, and utilities to match taxonomic names to 'Open Tree identifiers'. The 'Open Tree of Life' aims at assembling a comprehensive phylogenetic tree for all named species.

R and C++11

Rcpp11 includes a header only C++11 library that facilitates integration between R and modern C++.

Geometries to Plot Networks with 'ggplot2'

Geometries to plot network objects with 'ggplot2'.

Airborne LiDAR Data Manipulation and Visualization for Forestry Applications

Airborne LiDAR (Light Detection and Ranging) interface for data manipulation and visualization. Read/write 'las' and 'laz' files, computation of metrics in area based approach, point filtering, artificial point reduction, classification from geographic data, normalization, individual tree segmentation and other manipulations.

Extensions for 'Flextable'

Build display tables easily by extending the functionality of the 'flextable' package. Features include spanning header, grouping rows, parsing markdown and so on.

Create 'Ascii' Screen Casts from R Scripts

Record 'asciicast' screen casts from R scripts. Convert them to animated SVG images, to be used in 'README' files, or blog posts. Includes 'asciinema-player' as an 'HTML' widget, and an 'asciicast' 'knitr' engine, to embed 'ascii' screen casts in 'Rmarkdown' documents.

A Toolbox for Manipulating Biological Sequences

Classes and functions to work with biological sequences (DNA, RNA and amino acid sequences). Implements S3 infrastructure to work with biological sequences as described in Keck (2020) . Provides a collection of functions to perform biological conversion among classes (transcription, translation) and basic operations on sequences (detection, selection and replacement based on positions or patterns). The package also provides functions to import and export sequences from and to other package formats.