Double Log Normal Distribution Functions

Functions to sample from the double log normal distribution and calculate the density, distribution and quantile functions.

Pretty Scientific Plotting with Minor-Tick and Log Minor-Tick Support

Functions to make useful (and pretty) plots for scientific plotting. Additional plotting features are added for base plotting, with particular emphasis on making attractive log axis plots.

Life Logging

Provides a framework for combining self-data (exercise, sleep, etc.) from multiple sources (fitbit, Apple Health), creating visualizations, and experimenting on onself.

Fast Nearest Neighbour Search (Wraps ANN Library) Using L2 Metric

Finds the k nearest neighbours for every point in a given dataset in O(N log N) time using Arya and Mount's ANN library (v1.1.3). There is support for approximate as well as exact searches, fixed radius searches and 'bd' as well as 'kd' trees. The distance is computed using the L2 (Euclidean) metric. Please see package 'RANN.L1' for the same functionality using the L1 (Manhattan, taxicab) metric.

Logging in 'R' and Post to 'Azure Log Analytics' Workspace

It extends the functionality of 'logger' package. Additional logging metadata can be configured to be collected. Logging messages are displayed on console and optionally they are sent to 'Azure Log Analytics' workspace in real-time.

Fits Poisson-Sum-of-Gammas GLMs, Tweedie GLMs, and Delta Log-Normal Models

Fits models to catch and effort data. Single-species models are 1) delta log-normal, 2) Tweedie, or 3) Poisson-gamma (G)LMs.

Log Execution of Scripts

Logging of scripts suitable for clinical trials using 'Quarto' to create nice human readable logs. 'whirl' enables execution of scripts in batch, while simultaneously creating logs for the execution of each script, and providing an overview summary log of the entire batch execution.

Add Logging to Functions

Decorate functions to make them return enhanced output. The enhanced output consists in an object of type 'chronicle' containing the result of the function applied to its arguments, as well as a log detailing when the function was run, what were its inputs, what were the errors (if the function failed to run) and other useful information. Tools to handle decorated functions are included, such as a forward pipe operator that makes chaining decorated functions possible.

Various R Programming Tools

Functions to assist in R programming, including: - assist in developing, updating, and maintaining R and R packages ('ask', 'checkRVersion', 'getDependencies', 'keywords', 'scat'), - calculate the logit and inverse logit transformations ('logit', 'inv.logit'), - test if a value is missing, empty or contains only NA and NULL values ('invalid'), - manipulate R's .Last function ('addLast'), - define macros ('defmacro'), - detect odd and even integers ('odd', 'even'), - convert strings containing non-ASCII characters (like single quotes) to plain ASCII ('ASCIIfy'), - perform a binary search ('binsearch'), - sort strings containing both numeric and character components ('mixedsort'), - create a factor variable from the quantiles of a continuous variable ('quantcut'), - enumerate permutations and combinations ('combinations', 'permutation'), - calculate and convert between fold-change and log-ratio ('foldchange', 'logratio2foldchange', 'foldchange2logratio'), - calculate probabilities and generate random numbers from Dirichlet distributions ('rdirichlet', 'ddirichlet'), - apply a function over adjacent subsets of a vector ('running'), - modify the TCP_NODELAY ('de-Nagle') flag for socket objects, - efficient 'rbind' of data frames, even if the column names don't match ('smartbind'), - generate significance stars from p-values ('stars.pval'), - convert characters to/from ASCII codes ('asc', 'chr'), - convert character vector to ASCII representation ('ASCIIfy'), - apply title capitalization rules to a character vector ('capwords').

Bio-Logging Toolbox

An R-shiny application to visualize bio-loggers time series at a microsecond precision as Acceleration, Temperature, Pressure, Light intensity. It is possible to link behavioral labels extracted from 'BORIS' software < http://www.boris.unito.it> or manually written in a csv file.