Implements the estimation of local (and global) association measures: Lewontin's D, Ducher's Z, pointwise mutual information, normalized pointwise mutual information and chi-squared residuals. The significance of local (and global) association is accessed using p-values estimated by permutations.
The zebu R package implements different tools related to local association measures in three main functions. It replaces the previous web application written using shiny.
lassie estimates local (and global) association measures: Ducher's Z, pointwise mutual information, normalized pointwise mutual information and chi-squared residuals.
permtest accesses the significance of local (and global) association values using p-values estimated by permutations.
chisqtest accesses the significance for two dimensional chi-squared analysis.
Get the released version from CRAN.
install.packages("zebu")
Please read the vignette.
vignette("zebu")
Olivier Martin [email protected]
Michel Ducher [email protected]
zebu 0.2.2 Copyright (C) 2023
This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
The GNU General Public License is available at https://gnu.org/licenses/
The source code can be found at https://github.com/oliviermfmartin/zebu