Annotate Variants in the Untranslated Regions

A fast, user-friendly tool for annotating potential deleterious variants in the untranslated regions for both human and mouse species. Y Liu, JD Dougherty (2021) .


Reference manual

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1.0.4 by Yating Liu, 2 months ago

Browse source code at

Authors: Yating Liu [aut, cre] , Joseph D. Dougherty [aut]

Documentation:   PDF Manual  

GPL (>= 3) license

Imports parallel, doParallel, data.table, readr, stringr, biomaRt, vcfR, Biostrings, dplyr, tidyr, keras, AnnotationHub, ensembldb, AnnotationFilter, BiocGenerics, GenomicFeatures, GenomicRanges, IRanges, foreach, rtracklayer, stats, utils, xml2

Suggests testthat, knitr, rmarkdown, ggplot2

System requirements: Linux or MacOS Intel chip tensorflow (1.14.0)

See at CRAN