Annotate Variants in the Untranslated Regions

A fast, user-friendly tool for annotating potential deleterious variants in the untranslated regions for both human and mouse species. Y Liu, JD Dougherty (2021) .


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install.packages("utr.annotation")

1.0.4 by Yating Liu, 2 months ago


Browse source code at https://github.com/cran/utr.annotation


Authors: Yating Liu [aut, cre] , Joseph D. Dougherty [aut]


Documentation:   PDF Manual  


GPL (>= 3) license


Imports parallel, doParallel, data.table, readr, stringr, biomaRt, vcfR, Biostrings, dplyr, tidyr, keras, AnnotationHub, ensembldb, AnnotationFilter, BiocGenerics, GenomicFeatures, GenomicRanges, IRanges, foreach, rtracklayer, stats, utils, xml2

Suggests testthat, knitr, rmarkdown, ggplot2

System requirements: Linux or MacOS Intel chip tensorflow (1.14.0)


See at CRAN