T-Distributed Stochastic Neighbor Embedding for R (t-SNE)

A "pure R" implementation of the t-SNE algorithm.


  • version 0.1 - Initial release. main tsne function included.
  • version 0.1-1 - fixed misc. documentation omissions.
  • version 0.1-2 - using an initial configuration parameter automatically places the tsne in the 'late stage' mode, which is mainly focused on small scale adjustments.
  • version 0.1-3 - fix a broken gain equation, and made distance matrix checks more reliable

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.


0.1-3 by Justin Donaldson, 5 years ago


Report a bug at https://github.com/jdonaldson/rtsne/issues

Browse source code at https://github.com/cran/tsne

Authors: Justin Donaldson <[email protected]>

Documentation:   PDF Manual  

GPL license

Imported by DIscBIO, stylo.

Suggested by OTclust, ProjectionBasedClustering.

See at CRAN