Species Trait Data from Around the Web

Species trait data from many sources, including sequence data from NCBI (< https://www.ncbi.nlm.nih.gov/>), plant traits from BETYdb, and data from EOL Traitbank and BirdLife International.


traits: Species Trait Data from Around the Web

traits

R-CMD-check rstudio mirrordownloads cranversion DOI

R client for various sources of species trait data.

Docs: https://docs.ropensci.org/traits/

What is a trait? A “trait” for the purposes of this package is broadly defined as an aspect of a species that can be described or measured, such as physical traits (size, length, height, color), behavioral traits (running speed, etc.), and even variables that make up the niche of the species (e.g., habitat).

Included in traits with the associated function prefix or function name:

Source

Function prefix

Link

BETYdb

betydb_

https://www.betydb.org/

NCBI

ncbi_

https://www.ncbi.nlm.nih.gov/

Encyclopedia of Life

traitbank_

https://github.com/EOL/publishing/blob/master/doc/api.md

Birdlife International

birdlife_

https://www.birdlife.org/

LEDA Traitbase

leda_

Zanne et al. plant dataset

tr_zanne

Amniote life history dataset

tr_ernest

Talk to us on the issues page (https://github.com/ropensci/traits/issues) if you know of a source of traits data with an API, and we’ll see about including it.

Installation

CRAN

install.packages("traits")

R-Universe (alternative)

install.packages(
  "traits",
  repos = c("https://ropensci.r-universe.dev", "https://cloud.r-project.org")
)

Development version from GitHub

remotes::install_github("ropensci/traits")
library("traits")
library("dplyr")

Contributors

Meta

  • Please report any issues or bugs.
  • License: MIT
  • Get citation information for traits in R doing citation(package = 'traits')
  • Please note that this package is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.

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Reference manual

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install.packages("traits")

0.6.0 by David LeBauer, 6 months ago


https://docs.ropensci.org/traits/, https://github.com/ropensci/traits


Report a bug at https://github.com/ropensci/traits/issues


Browse source code at https://github.com/cran/traits


Authors: David LeBauer [aut, cre] (ORCID: , Scott Chamberlain [aut, cph] (ORCID: , Zachary Foster [aut] , Ignasi Bartomeus [aut] , Chris Black [aut] , David Harris [aut] , Rupert Collins [ctb]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports crul, data.table, hoardr, httr, jsonlite, readr, rvest, taxize, tibble, xml2

Suggests dplyr, knitr, plyr, rmarkdown, testthat


Suggested by metacoder.


See at CRAN