Evolutionary Analysis

A generic tool for manifold analysis. It allows to infer a relevant transition or evolutionary path which can highlights the features involved in a specific process. 'spathial' can be useful in all the scenarios where the temporal (or pseudo-temporal) evolution is the main problem (e.g. tumor progression). The algorithm for finding the principal path is described in: Ferrarotti et al., (2019) ."


Reference manual

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0.1.2 by Erika Gardini, a year ago

Browse source code at https://github.com/cran/spathial

Authors: Erika Gardini [aut, cre] , Federico M. Giorgi [aut] , Sergio Decherchi [aut] , Andrea Cavalli [aut]

Documentation:   PDF Manual  

GPL-3 license

Imports pracma, igraph, matrixStats, MASS, Rtsne, class, utils, knitr, rmarkdown, irlba

See at CRAN