seqminer
Efficiently Read Sequence Data (VCF Format, BCF Format, METAL Format and BGEN Format) into R
Integrate sequencing data (Variant call format, e.g. VCF or BCF) or meta-analysis results in R. This package can help you (1) read VCF/BCF/BGEN files by chromosomal ranges (e.g. 1:100-200); (2) read RareMETAL summary statistics files; (3) read tables from a tabix-indexed files; (4) annotate VCF/BCF files; (5) create customized workflow based on Makefile.
Efficiently Read Sequence Data (VCF Format, BCF Format and METAL Format) into R
Quick introduction is available: [http://seqminer.genomic.codes/].
Install the latest stable version:
install.packages("seqminer")
Install the development version (devtools package is required):
devtools::install_github("zhanxw/seqminer")
Citation: