Processes Calcium Imaging Data

Identifies the locations of neurons, and estimates their calcium concentrations over time using the SCALPEL method proposed in Petersen, A., Simon, N., and Witten, D. SCALPEL: Extracting Neurons from Calcium Imaging Data <>, which is to appear in the Annals of Applied Statistics.


Reference manual

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1.0.1 by Ashley Petersen, a year ago

Browse source code at

Authors: Ashley Petersen

Documentation:   PDF Manual  

GPL (>= 2) license

Imports Matrix, R.matlab, protoclust, igraph, SDMTools, gam

Suggests knitr, rmarkdown

See at CRAN