Processes Calcium Imaging Data

Identifies the locations of neurons, and estimates their calcium concentrations over time using the SCALPEL method proposed in Petersen, Ashley; Simon, Noah; Witten, Daniela. SCALPEL: Extracting neurons from calcium imaging data. Ann. Appl. Stat. 12 (2018), no. 4, 2430--2456. doi:10.1214/18-AOAS1159. < https://projecteuclid.org/euclid.aoas/1542078051>.


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install.packages("scalpel")

1.0.2 by Ashley Petersen, 11 days ago


www.ajpete.com/software


Browse source code at https://github.com/cran/scalpel


Authors: Ashley Petersen


Documentation:   PDF Manual  


GPL (>= 2) license


Imports Matrix, R.matlab, protoclust, igraph, gam

Suggests knitr, rmarkdown


See at CRAN