Processes Calcium Imaging Data

Identifies the locations of neurons, and estimates their calcium concentrations over time using the SCALPEL method proposed in Petersen, A., Simon, N., and Witten, D. SCALPEL: Extracting Neurons from Calcium Imaging Data < https://ajpetecom.files.wordpress.com/2017/12/scalpel_dec17.pdf>, which is to appear in the Annals of Applied Statistics.


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install.packages("scalpel")

1.0.1 by Ashley Petersen, 9 months ago


www.ajpete.com/software


Browse source code at https://github.com/cran/scalpel


Authors: Ashley Petersen


Documentation:   PDF Manual  


GPL (>= 2) license


Imports Matrix, R.matlab, protoclust, igraph, SDMTools, gam

Suggests knitr, rmarkdown


See at CRAN