Processes Calcium Imaging Data

Identifies the locations of neurons, and estimates their calcium concentrations over time using the SCALPEL method proposed in Petersen, Ashley; Simon, Noah; Witten, Daniela. SCALPEL: Extracting neurons from calcium imaging data. Ann. Appl. Stat. 12 (2018), no. 4, 2430--2456. . <>.


Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.


1.0.3 by Ashley Petersen, 10 months ago

Browse source code at

Authors: Ashley Petersen

Documentation:   PDF Manual  

GPL (>= 2) license

Imports Matrix, R.matlab, protoclust, igraph, gam

Suggests knitr, rmarkdown

See at CRAN