Metrics for Benchmarking scRNA-Seq Batch Correction

Evaluate batch effect correction algorithms for scRNA-seq using multiple established methods, including the Adjusted Rand Index, Normalized Mutual Information, Local Inverse Simpson Index, and Silhouette Width. Methods for aggregating and weighing multiple metrics together are also included. For further explanation of methods, see Swamy et al. (2021) .


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install.packages("scPOP")

0.1.0 by Vinay Swamy, 2 months ago


Browse source code at https://github.com/cran/scPOP


Authors: Vinay Swamy [aut, cre] , David McGaughey [aut]


Documentation:   PDF Manual  


GPL-3 license


Imports Rcpp, Matrix, RANN, cluster

Linking to Rcpp, RcppArmadillo


See at CRAN