Gene and Splice Site Annotation Using Annotation Data from 'Ensembl' and 'UCSC' Genome Browsers

Contains functionalities for importing and managing downloaded genome annotation data from 'Ensembl' genome browser (European Bioinformatics Institute, < https://www.ensembl.org>) and from 'UCSC' genome browser (University of California, Santa Cruz, < https://genome.ucsc.edu/>) and annotation routines for genomic positions and splice site positions.


Reference manual

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install.packages("refGenome")

1.7.7 by ORPHANED, 7 years ago


Browse source code at https://github.com/cran/refGenome


Authors: Wolfgang Kaisers [aut, cre]


Documentation:   PDF Manual  


GPL-2 license


Imports DBI

Depends on methods, doBy, RSQLite


See at CRAN