Memory-Efficient, Visualize-Enhanced, Parallel-Accelerated GWAS Tool

A memory-efficient, visualize-enhanced, parallel-accelerated Genome-Wide Association Study (GWAS) tool. It can (1) effectively process large data, (2) rapidly evaluate population structure, (3) efficiently estimate variance components several algorithms, (4) implement parallel-accelerated association tests of markers three methods, (5) globally efficient design on GWAS process computing, (6) enhance visualization of related information. 'rMVP' contains three models GLM (Alkes Price (2006) ), MLM (Jianming Yu (2006) ) and FarmCPU (Xiaolei Liu (2016) ); variance components estimation methods EMMAX (Hyunmin Kang (2008) ;), FaSTLMM (method: Christoph Lippert (2011) , R implementation from 'GAPIT2': You Tang and Xiaolei Liu (2016) and 'SUPER': Qishan Wang and Feng Tian (2014) ), and HE regression (Xiang Zhou (2017) ).

News

Reference manual

install.packages("rMVP")

0.99.17 by Xiaolei Liu, a month ago

https://github.com/XiaoleiLiuBio/rMVP

Report a bug at https://github.com/XiaoleiLiuBio/rMVP/issues

Browse source code at https://github.com/cran/rMVP

Authors: Lilin Yin [aut] , Haohao Zhang [aut] , Zhenshuang Tang [aut] , Jingya Xu [aut] , Dong Yin [aut] , Zhiwu Zhang [aut] , Xiaohui Yuan [aut] , Mengjin Zhu [aut] , Shuhong Zhao [aut] , Xinyun Li [aut] , Qishan Wang [ctb] , Feng Tian [ctb] , Hyunmin Kang [ctb] , Xiang Zhou [ctb] , Xiaolei Liu [cre, aut, cph]

Documentation: PDF Manual

Apache License 2.0 license

Imports utils, stats, methods, graphics, grDevices, Rcpp

Depends on MASS, parallel, bigmemory

Suggests knitr, testthat, rmarkdown

Linking to Rcpp, RcppArmadillo, RcppEigen, RcppProgress, BH, bigmemory

System requirements: C++11

See at CRAN