GenAlEx is a popular Excel macro for genetic analysis and the 'poppr' R package allows import of GenAlEx formatted CSV data for genetic data analysis in R. This package allows for the import of GenAlEx formatted Excel files, serving as a small 'poppr' add on for those who have trouble or simply do not want to export their data into CSV format.
A small package that allows import of GenAlEx data directly into poppr from excel.
Setup is simple.
From CRAN:
install.packages("popprxl")
From GitHub:
install.packages("devtools")install_github("zkamvar/popprxl", build_vignettes = TRUE)
popprxl has one function: read.genalexcel()
. It can be used to read in GenAlEx data directly from excel:
library("popprxl")#> Loading required package: adegenet#> Loading required package: ade4#>#> /// adegenet 2.0.1 is loaded ////////////#>#> > overview: '?adegenet'#> > tutorials/doc/questions: 'adegenetWeb()'#> > bug reports/feature requests: adegenetIssues()#> This is poppr version 2.1.1. To get started, type package?poppr#> OMP parallel support: unavailable#>#> popprxl is loaded. Use read.genalexcel() to read in your data.(nancyxlsx <- system.file("files/nancycats.xlsx", package = "popprxl"))#> [1] "/Users/zhian/R/popprxl/files/nancycats.xlsx"(nancy <- read.genalexcel(nancyxlsx))#>#> This is a genclone object#> -------------------------#> Genotype information:#>#> 237 original multilocus genotypes#> 237 diploid individuals#> 9 codominant loci#>#> Population information:#>#> 1 stratum - Pop#> 17 populations defined - P01 P02 P03 ... P15 P16 P17
BUG FIX
NEW FEATURES
BUG FIX