PLS Analyses for Genomics

Routines for PLS-based genomic analyses, implementing PLS methods for classification with microarray data and prediction of transcription factor activities from combined ChIP-chip analysis. The >=1.2-1 versions include two new classification methods for microarray data: GSIM and Ridge PLS. The >=1.3 versions includes a new classification method combining variable selection and compression in logistic regression context: logit-SPLS; and an adaptive version of the sparse PLS.


Reference manual

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1.5-2 by Ghislain Durif, 3 years ago

Browse source code at

Authors: Anne-Laure Boulesteix <[email protected]> , Ghislain Durif <[email protected]> , Sophie Lambert-Lacroix <[email protected]> , Julie Peyre <[email protected]> , and Korbinian Strimmer <[email protected]>.

Documentation:   PDF Manual  

Task views: Multivariate Statistics

GPL (>= 2) license

Imports MASS, boot, parallel, reshape2, plyr, fields, RhpcBLASctl

Imported by MultiGroupO.

Depended on by MAclinical.

Suggested by musicNMR.

See at CRAN