Permutation Based Gene Expression Pathway Analysis

Can be used to carry out permutation based gene expression pathway analysis. This work was supported by a National Institute of Allergy and Infectious Disease/National Institutes of Health contract (No. HHSN272200900059C).


permPATH changes

changes in permPATH 0.6

  • vignette uses local copy of "c2.cp.reactome.v4.0.symbols.gmt"

  • minor help file fixes

changes in permPATH 0.4

  • fixed overloading ambiguity in sqrt

  • fixed ambiguous reference to rank

changes in permPATH 0.3

  • removed dependancy on Rmath.h

Reference manual

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1.2 by Ivo D. Shterev, 10 months ago

Browse source code at

Authors: Ivo D. Shterev [aut, cre] , Kouros Owzar [aut] , Gregory D. Sempowski [aut] , Kenneth Wilder [ctb, cph] (wrote original version of ranker.h)

Documentation:   PDF Manual  

GPL-3 license

Depends on R2HTML, xtable

Suggests knitr

See at CRAN