An automated pipeline for the detection, integration and reporting of predefined features across a large number of mass spectrometry data files.
Package for Peak Picking and ANnoTation of High resolution Experiments in R, implemented in
peakPantheR implements functions to detect, integrate and report pre-defined features in MS files. It is designed for:
onefile at a time
parallel, store results in a
Install the development version of the package directly from GitHub with:
If the dependencies
MSnbase are not successfully installed,
Bioconductor must be added to the default repositories with:
Both real time and parallel compound integration require a common set of information:
m/zwindow) for each compound.
More information is available in the following vignettes:
peakPantheR is licensed under the GPLv3
As a summary, the GPLv3 license requires attribution, inclusion of copyright and license information, disclosure of source code and changes. Derivative work must be available under the same terms.
© National Phenome Centre (2018)