A Collection of Proteome Panels and Metadata

It aggregates protein panel data and metadata for protein quantitative trait locus (pQTL) analysis using 'pQTLtools' (< https://jinghuazhao.github.io/pQTLtools/>). The package includes data from affinity-based panels such as 'Olink' (< https://olink.com/>) and 'SomaScan' (< https://somalogic.com/>), as well as mass spectrometry-based panels from 'CellCarta' (< https://cellcarta.com/>), 'Seer' (< https://seer.bio/>) and 'SWATH-MS' (). The metadata encompasses updated annotations and publication details.

output: github_document

A Collection of Proteome Panels and Metadata

It aggregates protein panel data and metadata for protein quantitative trait locus (pQTL) analysis using 'pQTLtools' (https://jinghuazhao.github.io/pQTLtools/). The package includes data from affinity-based panels such as 'Olink' (https://olink.com/) and 'SomaScan' (https://somalogic.com/), as well as mass spectrometry-based panels from 'CellCarta' (https://cellcarta.com/), 'Seer' (https://seer.bio/) and 'SWATH-MS' (doi:10.15252/msb.20178126). The metadata encompasses updated annotations and publication details.

Installation

1. Install from R

# CRAN
install.packages("pQTLdata")

# GitHub
if (!requireNamespace("remotes", quietly = TRUE)) install.packages("remotes")
remotes::install_github("jinghuazhao/pQTLdata")

2. Install from GitHub repository

git clone https://github.com/jinghuazhao/pQTLdata
R CMD INSTALL pQTLdata

3. Install from zip file

wget https://github.com/jinghuazhao/pQTLdata/archive/refs/heads/main.zip
unzip main

A summary of datasets

library(help=pQTLdata)
help(pQTLdata)