Command Line Option Parser

A command line parser inspired by Python's 'optparse' library to be used with Rscript to write "#!" shebang scripts that accept short and long flag/options.

optparse: Command line optional argument parser

A pure R language command line parser inspired by Python's optparse library to be used with Rscript to write #! shebang scripts that accept short and long flag/options.

To install the last version released on CRAN use the following command:

install.packages("optparse")

To install the development version use the following command:

install.packages("remotes")
remotes::install_github("trevorld/r-optparse")

examples

A simple example:

library("optparse")
parser <- OptionParser() |>
    add_option(c("-v", "--verbose"), action = "store_true",
               default = TRUE, help = "Print extra output [default]") |>
    add_option(c("-q", "--quietly"), action = "store_false",
               dest = "verbose", help = "Print little output") |>
    add_option(c("-c", "--count"), type = "integer", default = 5,
               help = "Number of random normals to generate [default %default]",
               metavar = "number")
parse_args(parser, args = c("--quietly", "--count=15"))

## $help
## [1] FALSE
## 
## $verbose
## [1] FALSE
## 
## $count
## [1] 15

Note that the args argument of parse_args() default is commandArgs(trailing=TRUE) so it typically doesn't need to be explicitly set if writing an Rscript.

optparse automatically creates a help option:

parse_args(parser, args = c("--help"))

Usage: %prog [options]


Options:
    -h, --help
        Show this help message and exit

    -v, --verbose
        Print extra output [default]

    -q, --quietly
        Print little output

    -c NUMBER, --count=NUMBER
        Number of random normals to generate [default 5]


Error in parse_args(parser, args = c("--help")) : help requested

Note by default when optparse::parse_args() sees a --help flag it will first print out a usage message and then either throw an error in interactive use or call quit() in non-interactive use (i.e. when used within an Rscript called by a shell). To disable the error/quit set print_help_and_exit = FALSE in parse_args() and to simply print out the usage string one can also use the function print_usage().

optparse has limited positional argument support, other command-line parsers for R such as argparse have richer positional argument support:

parse_args(parser, args = c("-vc", "25", "75", "22"), positional_arguments = TRUE)

## $options
## $options$help
## [1] FALSE
## 
## $options$verbose
## [1] TRUE
## 
## $options$count
## [1] 25
## 
## 
## $args
## [1] "75" "22"

The function parse_args2 wraps parse_args while setting positional_arguments=TRUE and convert_hyphens_to_underscores=TRUE:

parse_args2(parser, args = c("-vc", "25", "75", "22"))

## $options
## $options$help
## [1] FALSE
## 
## $options$verbose
## [1] TRUE
## 
## $options$count
## [1] 25
## 
## 
## $args
## [1] "75" "22"

other R packages

• When optparse was originally written in 2009 the only option parsing package on CRAN was the comparatively low-level getopt package but as of 2026 there are at least 13 R R Argument/Option Parser Packages.
• Personally I use optparse for most scripts I write:
  • It supports the most important features in an argument/option parsing packages with a reasonably high-level interface.
  • It is well-tested with high code coverage and lots of users with millions of cumulative downloads over the past 15+ years.
  • It has no dependencies.
  • It features a stable API with a semantic version number greater than 1.0.
• Occasionally I'll also use the argparse package when I need advanced features unsupported by optparse like sub parsers and named positional arguments:
  • In general argparse supports more advanced features than optparse but depends on Python and three R packages whereas optparse is a pure R package with no dependencies.
  • However, unlike argparse, optparse does support a callback action and also allows writing custom help usage formatters.