Noise Quantification in High Throughput Sequencing Output

Quantifies and removes technical noise from high-throughput sequencing data. Two approaches are used, one based on the count matrix, and one using the alignment BAM files directly. Contains several options for every step of the process, as well as tools to quality check and assess the stability of output.


Reference manual

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1.0.0 by Ilias Moutsopoulos, 8 months ago

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Authors: Ilias Moutsopoulos [aut, cre] , Irina Mohorianu [aut, ctb] , Hajk-Georg Drost [ctb] , Elze Lauzikaite [ctb]

Documentation:   PDF Manual  

GPL-2 license

Imports utils, grDevices, tibble, dplyr, magrittr, ggplot2, preprocessCore, IRanges, GenomicRanges, Rsamtools, philentropy, doParallel, foreach

Suggests testthat, roxygen2, knitr, rmarkdown

See at CRAN