Noise Quantification in High Throughput Sequencing Output

Quantifies and removes technical noise from high-throughput sequencing data. Two approaches are used, one based on the count matrix, and one using the alignment BAM files directly. Contains several options for every step of the process, as well as tools to quality check and assess the stability of output.


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install.packages("noisyr")

0.1.0 by Ilias Moutsopoulos, 18 days ago


https://github.com/Core-Bioinformatics/noisyR


Report a bug at https://github.com/Core-Bioinformatics/noisyR/issues


Browse source code at https://github.com/cran/noisyr


Authors: Ilias Moutsopoulos [aut, cre] , Irina Mohorianu [aut, ctb] , Hajk-Georg Drost [ctb] , Elze Lauzikaite [ctb]


Documentation:   PDF Manual  


GPL-2 license


Imports utils, grDevices, tibble, dplyr, magrittr, ggplot2, preprocessCore, IRanges, GenomicRanges, Rsamtools, philentropy, doParallel, foreach

Suggests testthat, roxygen2


See at CRAN