Multistage MCMC Method for Detecting DMRs

Implements differential methylation region (DMR) detection using a multistage Markov chain Monte Carlo (MCMC) algorithm based on the alpha-skew generalized normal (ASGN) distribution. Version 0.2.0 removes the Anderson-Darling test stage, improves computational efficiency of the core ASGN and multistage MCMC routines, and adds convenience functions for summarizing and visualizing detected DMRs. The methodology is based on Yang (2025) < https://www.proquest.com/docview/3218878972>.


Reference manual

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install.packages("mmcmcBayes")

0.2.0 by Zhexuan Yang, 9 months ago


https://github.com/zyang1919/mmcmcBayes


Report a bug at https://github.com/zyang1919/mmcmcBayes/issues


Browse source code at https://github.com/cran/mmcmcBayes


Authors: Zhexuan Yang [aut, cre] , Duchwan Ryu [aut] , Feng Luan [aut]


Documentation:   PDF Manual  


GPL-3 license


Imports stats, graphics, MCMCpack

Suggests kSamples, testthat, knitr, rmarkdown


See at CRAN