Microbiota STability ASsessment via Iterative cluStering

The toolkit 'µSTASIS' has been developed for the stability analysis of microbiota in a temporal framework by leveraging on iterative clustering. Concretely, the core function uses Hartigan-Wong k-means algorithm as many times as possible for stressing out paired samples from the same individuals to test if they remain together for multiple numbers of clusters over a whole data set of individuals. Moreover, the package includes multiple functions to subset samples from paired times, validate the results or visualize the output.


Reference manual

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0.1.0 by Pedro Sánchez-Sánchez, 4 months ago

Browse source code at https://github.com/cran/microSTASIS

Authors: Pedro Sánchez-Sánchez [aut, cre] , Alfonso Benítez-Páez [aut]

Documentation:   PDF Manual  

GPL (>= 3) license

Imports crayon, fmsb, future, future.apply, ggplot2, ggside, progressr, reshape2, stats, stringr

See at CRAN