Cell Type Annotation Using Large Language Models

Automated cell type annotation for single-cell RNA sequencing data using consensus predictions from multiple large language models. Integrates with Seurat objects and provides uncertainty quantification for annotations. Supports various LLM providers including OpenAI, Anthropic, and Google. For details see Yang et al. (2026) .


Reference manual

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install.packages("mLLMCelltype")

2.0.8 by Chen Yang, a month ago


https://cafferyang.com/mLLMCelltype/


Report a bug at https://github.com/cafferychen777/mLLMCelltype/issues


Browse source code at https://github.com/cran/mLLMCelltype


Authors: Chen Yang [aut, cre, cph]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports httr, jsonlite, R6, digest, stats, tools, utils

Suggests knitr, rmarkdown, Seurat, testthat


See at CRAN