Gene set analysis based on GSZ-scoring function and asymptotic p-value

Performs gene set analysis based on GSZ scoring function and asymptotic p-value. It is different from GSZ in that it implements asymptotic p-values instead of empirical p-values. Asymptotic p-values are calculated by fitting suitable distribution model to the null distribution. Unlike empirical p-values, resolution of asymptotic p-values are independent of the number of permutations and hence requires considerably fewer permutations. In addition, this package allows gene set analysis with seven other popular gene set analysis methods.


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install.packages("mGSZ")

1.0 by Pashupati Mishra, 5 years ago


Browse source code at https://github.com/cran/mGSZ


Authors: Pashupati Mishra , Petri Toronen


Documentation:   PDF Manual  


GPL (>= 2) license


Depends on Biobase, GSA, limma, MASS, ismev


See at CRAN