Lining Up Two Sets of Measurements

Tools for detecting and correcting sample mix-ups between two sets of measurements, such as between gene expression data on two tissues.


Build Status CRAN_Status_Badge

Karl W Broman

R/lineup is an R package with tools for detecting and correcting sample mix-ups between two sets of measurements, such as between gene expression data on two tissues.

This is particularly aimed at eQTL data for an experimental cross.

License

This package is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License, version 3, as published by the Free Software Foundation.

This program is distributed in the hope that it will be useful, but without any warranty; without even the implied warranty of merchantability or fitness for a particular purpose. See the GNU General Public License for more details.

A copy of the GNU General Public License, version 3, is available at https://www.r-project.org/Licenses/GPL-3

News

R/lineup 0.37-6

NEW FEATURES

  • Add example data

  • Add vignette

  • calc.locallod can do calculations in parallel

R/lineup 0.34-1

  • Initial release to CRAN

Reference manual

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install.packages("lineup")

0.37-11 by Karl W Broman, 3 months ago


https://github.com/kbroman/lineup


Report a bug at https://github.com/kbroman/lineup/issues


Browse source code at https://github.com/cran/lineup


Authors: Karl W Broman <[email protected]>


Documentation:   PDF Manual  


GPL-3 license


Imports qtl, class, graphics, grDevices, utils, stats, parallel

Suggests roxygen2, knitr, rmarkdown, devtools, testthat


See at CRAN